We recently had an instructor who had copied materials from his courses last year into his current courses. His Schoology gradebook in his linked sections only shows grades from assignments that are published. His Schoology gradebook for his standalone course shows all assignments even if they are unpublished.
After talking with support, I was told that this is how the gradebooks are intended to work. I do not fully understand the reasoning behind this, so I would just like to see consistency between linked and unlinked courses within the gradebook area (preferably with unpublished materials not showing up in the gradebook).